Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|66919054|gb|CX105902.1|CX105902EST: A-GAGGAGGAGA-CCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST:
gi|58671735|gb|CK060421.1|CK060421EST: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST:
gi|163928761|gb|EG711898.1|EG711898EST: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttttaaccttaagttctcaacttctatggttttctaatgttgttttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG
ttctaat putative branch site (score: 2)
ttttacctt putative PPT
ttttctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tataccagaaagatctaatgttctcaaaatgttatgcaaatgtctgtttttaaccttaagttctcaacttctatggttttctaatgttgttttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG