1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtagtatgatacttcttcttcttcttcagtattttggtgttcttctttagtgatgatttttttgtttttgtggtgcatttcttcctggggcatgtgcagTCATTTGGTGTGGGAGGACGGCTACTGTGGCCACGCATCATGCCCTGCCGGATCTGATCCTTCTGAAGCTCTGCCTACCGACGTCGGCTGTGCTGCTGCT
species | Oryza sativa |
transcript | LOC_Os11g06010.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGTGGTCGTACGCCGTCTTCTGGAAGGCCATCGGCGCCGCCGACCCCGT TCATTTGGTGTGGGAGGACGGCTACTGTGGCCACGCATCATGCCCTGCCGGEST: gi|58652868|gb|CK041548.1|CK041548
genomic: GGGTGGTCGTACGCCGTCTTCTGGAAGGCCATCGGCGCCGCCGACCCCGTgtaagcatcc ... gcatgtgcagTCATTTGGTGTGGGAGGACGGCTACTGTGGCCACGCATCATGCCCTGCCGG
EST: CGCCGTCTTCTGGAAGGCCATCGGCGCCGCCGACCCCGT TCATTTGGTGTGGGAGGACGGCTACTGTGGCCACGCATCATGCCCTGCCGG
genomic: CGCCGTCTTCTGGAAGGCCATCGGCGCCGCCGACCCCGTgtaagcatcc ... gcatgtgcagTCATTTGGTGTGGGAGGACGGCTACTGTGGCCACGCATCATGCCCTGCCGG
ctttagtgatgatttttttgtttttgtggtgcatttcttcctggggcatgtgcagTCATTTGGTGTGGGAGGACGGCTACTGTGGCCACGCATCATGCCCTGCCGGATCTGATCCTTCTGAAGCTCTGCCTACCGACGTCGGCTGTGCTGCTGCT
atgatttttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagtatgatacttcttcttcttcttcagtattttggtgttcttctttagtgatgatttttttgtttttgtggtgcatttcttcctggggcatgtgcagTCATTTGGTGTGGGAGGACGGCTACTGTGGCCACGCATCATGCCCTGCCGGATCTGATCCTTCTGAAGCTCTGCCTACCGACGTCGGCTGTGCTGCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - -tgatact
- - - - - - - - - - - - - - - - - -tggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - gtgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctgg