Sequence
atgc intronic sequence ATGC exonic sequencegtgagtacccctcgctctctccctacctaaaccctaatcgctctcctctcctcgcgattgattgctattgagagttttctgaggagggaattgggggggattggttccctgtttgccctgtgtgctcgttttgatcggaggtgagcagTGGCGGCGGTGGCGGACGGGATGAAGGCGTGGGGGGTGATGCGGGAGCGGGCGTACGCCTTCGACCTCGTGCTCACGGAGGTCACTATGCCCACGCTCTC
Basic information
species | Oryza sativa |
transcript | LOC_Os11g05930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os11g05930.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G135446_T01 (Zea mays), 3'ss of exon 1
gtgagtacccctcgctctctccctacctaaaccctaatcgctctcctctcctcgcgattgattgctattgagagttttctgaggagggaattgggggggattggttcc-ctgtttgccctgtgtgctcgt----tttgatcggaggtgagcagTGGCGGCGGTGGCGGACGGGATGAAGGCGTGGGGGGTGATGCGGGAGCGGGCGTACGCCTTCGACCTCGTGCTCACGGAGGTCACTATGCCCACGCTCTC
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gtgagt-cgccgcgccctctact--ccttctctcccatggctccccagcgagacctgcttgctgcggctgttaaccccccacgga---aattctcggcgctccgttcttctgactcctctcccccctcgcgacctccgggagacggctggcagTGGCCGCGGTCGCGGACGGGATGAAGGCGTGGGAGGTCATGCGGGAGCGTGCCTACGACTTCGACCTCGTCCTCACCGAGGTCGCCATGCCCTCCCTCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33674795|gb|CF303034.1|CF303034EST: CTCCACCCGCCAGGTCGTCACCGCGCTCCTCCGCAAGTGCGGCTACCGCG TGGCGGCGGTGGCGGACGGGATGAAGGCGTGGGGGGTGATGCGGGAGCGGG
genomic: CTCCACCCGCCAGGTCGTCACCGCGCTCCTCCGCAAGTGCGGCTACCGCGgtgagtaccc ... aggtgagcagTGGCGGCGGTGGCGGACGGGATGAAGGCGTGGGGGGTGATGCGGGAGCGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggggggattggttccctgtttgccctgtgtgctcgttttgatcggaggtgagcagTGGCGGCGGTGGCGGACGGGATGAAGGCGTGGGGGGTGATGCGGGAGCGGGCGTACGCCTTCGACCTCGTGCTCACGGAGGTCACTATGCCCACGCTCTC
ttttgat putative branch site (score: 4)
ttttgat TA-rich tract