Sequence
atgc intronic sequence ATGC exonic sequence...tacctaatatttacatctgctctttatatcctgataatgctagcagagaatactcgatattatctgctatatatcttgtcttctagaaaatatttttcagGAACAATTGAGCACTCGAGTAGGTTGTGGTCAAGTACACCGCATTATCGAGAACGATCTCGACGAATGCAGAGTCGTCGCGCCCAACCTGCCAACGAAGA
Basic information
species | Oryza sativa |
transcript | LOC_Os11g05250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagaatactcgatattatctgctatatatcttgtcttctagaaaatatttttcagGAACAATTGAGCACTCGAGTAGGTTGTGGTCAAGTACACCGCATTATCGAGAACGATCTCGACGAATGCAGAGTCGTCGCGCCCAACCTGCCAACGAAGA
tatttttc CT-rich tract
ttctagaaaatatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacctaatatttacatctgctctttatatcctgataatgctagcagagaatactcgatattatctgctatatatcttgtcttctagaaaatatttttcagGAACAATTGAGCACTCGAGTAGGTTGTGGTCAAGTACACCGCATTATCGAGAACGATCTCGACGAATGCAGAGTCGTCGCGCCCAACCTGCCAACGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - -catctgc
- - - - - - - atctgct
- - - - - - - - - - - - - - - - - - -tgctagc
- - - - - - - - - - - - - - - - - - - - - - agagaata