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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacaagatttttcttttgtgcttgcagactcttttcttctctcggttgctgtatgaattggcatctgatggtagGTTTGGCTTTTGTTTGTGTAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCA

Basic information

species Oryza sativa
transcript LOC_Os11g04720.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g04720.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G129954_T02 (Zea mays), 3'ss of exon 1
--gtattacaagatttttcttttgtgcttgcagactcttttcttctctcggttgctgtatgaattggcatctgatggtagGTTTGGCTTTTG--TTTGTGTAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCA---------------------
    | |     |        || | |  |    || |     |     |  |        |  ||||         | | ||| | || ||  | | || ||| |||||||| || |||||||||||||| ||| ||||| |||| |||||||| || ||   ||       | ||   ||                     
gcaaactcagccaccggatgattattcccgtctcctttgcctctgctctgagtctcacgaaaggtggccggcccctttggcttttgtttctgaatgtatgcagTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGGTAAGAAG

upper sequence: LOC_Os11g04720.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G129954_T01 (Zea mays), 3'ss of exon 1
--gtattacaagatttttcttttgtgcttgcagactcttttcttctctcggttgctgtatgaattggcatctgatggtagGTTTGGCTTTTG--TTTGTGTAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCA-------------
    | |     |        || | |  |    || |     |     |  |        |  ||||         | | ||| | || ||  | | || ||| |||||||| || |||||||||||||| ||| ||||| |||| |||||||| || ||   ||       | ||   ||             
gcaaactcagccaccggatgattattcccgtctcctttgcctctgctctgagtctcacgaaaggtggccggcccctttggcttttgtttctgaatgtatgcagTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgcagactcttttcttctctcggttgctgtatgaattggcatctgatggtagGTTTGGCTTTTGTTTGTGTAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCA
                                           atctgat  putative branch site (score: 4)
                                tatgaatt  TA-rich tract