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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttactcttgcaaaccatacagatgctagattcttcctttcctattttgttttacaccgaagattttcctttctcaccttcttttatcatcagtagaatttttactgccaaaggatgccctgaaaaaaaaaagtaagatctgaccatctggacctactttcagTTACAAGCATCACAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTTCTCATTCATGGCATATGCAAGGCCAATATACTGATTCCTCCTGCAATGGA

Basic information

species Oryza sativa
transcript LOC_Os11g04210.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88311590|gb|CI574807.1|CI574807
EST:     TTCTCTCCAAATGCTTGCAGAGCAAGTGCTGATGACCGTAGCACCAGCAA                         TTACAAGCATCACAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTTC
genomic: TTCTCTCCAAATGCTTGCAGAGCAAGTGCTGATGACCGTAGCACCAGCAAgtaagtttta ... ctactttcagTTACAAGCATCACAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTTC
EST: gi|88314256|gb|CI602588.1|CI602588
EST:     TTCTCTCCAAATGCTTGCAGAGCAAGTGCTGATGACCGTAGCACCAGCAA                         TTACAAGCATCACAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTTC
genomic: TTCTCTCCAAATGCTTGCAGAGCAAGTGCTGATGACCGTAGCACCAGCAAgtaagtttta ... ctactttcagTTACAAGCATCACAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaggatgccctgaaaaaaaaaagtaagatctgaccatctggacctactttcagTTACAAGCATCACAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTTCTCATTCATGGCATATGCAAGGCCAATATACTGATTCCTCCTGCAATGGA
                             atctgac  putative branch site (score: 3)
                                            cctactttc  putative PPT
              aaaaaaaaaagtaaga  TA-rich tract