1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcctgttcttcatgtgttttgagattataactcaattcagtgacatatatcaagtgttcatatcaacagtcttcttcacattgtaacatctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAATGCTTGCAGAGCAAGTGCT
species | Oryza sativa |
transcript | LOC_Os11g04210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAG AATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGEST: gi|88571343|gb|CI662716.1|CI662716
genomic: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAGgtgcgatggt ... ctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
EST: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAG AATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGEST: gi|38474120|gb|CF958252.1|CF958252
genomic: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAGgtgcgatggt ... ctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
EST: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAG AATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGEST: gi|33655711|gb|CF278325.1|CF278325
genomic: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAGgtgcgatggt ... ctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
EST: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAG AATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGEST: gi|88314256|gb|CI602588.1|CI602588
genomic: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAGgtgcgatggt ... ctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
EST: GATCGGGTTGGCTTCCAATTTGTCGATCGATCGAG AATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGEST: gi|88311590|gb|CI574807.1|CI574807
genomic: GATCGGGTTGGCTTCCAATTTGTCGATCGATCGAGgtgcgatggt ... ctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
EST: GGGTTGGCTTCCAATTTGTCGATCGATCGAG AATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGEST: gi|88353497|gb|CI631682.1|CI631682
genomic: GGGTTGGCTTCCAATTTGTCGATCGATCGAGgtgcgatggt ... ctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
EST: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAG AATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGEST: gi|88288344|gb|CI661549.1|CI661549
genomic: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAGgtgcgatggt ... ctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
EST: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAG AATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGEST: gi|88421783|gb|CI621427.1|CI621427
genomic: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAGgtgcgatggt ... ctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
EST: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAG AATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
genomic: TCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGAGgtgcgatggt ... ctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAG
atatatcaagtgttcatatcaacagtcttcttcacattgtaacatctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAATGCTTGCAGAGCAAGTGCT
ttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctgttcttcatgtgttttgagattataactcaattcagtgacatatatcaagtgttcatatcaacagtcttcttcacattgtaacatctgattccagAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAATGCTTGCAGAGCAAGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
ctcctgt
- - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaca