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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttcatgccatctagtaatagcatctacttgtccgatgcctatcttccttagttgacttctcatactgtatcatcttctggctttatttgttcaacagACACACGGCCTGCACTAGTGTTTACAGCTCCAAGTATGGCTTCCAGAGAATCCTTCATGAGTACCATTTTCTTCTTCTTGCTTCTGTTCTCCCTCGGCTG

Basic information

species Oryza sativa
transcript LOC_Os11g03730.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29673416|gb|CB669691.1|CB669691
EST:     TCAGGCGGCCGCGCGACCTCCTCTGCTTGCGTTGCGTGCCTCCCCACGAG                         ACACACGGCCTGCACTAGTGTTTACAGCTCCAAGTATGGCTTCCAGAGAAT
genomic: TCAGGCGGCCGCGCGACCTCCTCTGCTTGCGTTGCGTGCCTCCCCACGAGgtcgaggtac ... tgttcaacagACACACGGCCTGCACTAGTGTTTACAGCTCCAAGTATGGCTTCCAGAGAAT
EST: gi|29628283|gb|CB633294.1|CB633294
EST:     TCAGGCGGCCGCGCGACCTCCTCTGCTTGCGTTGCGTGCCTCCCCACGAG                         ACACACGGCCTGCACTAGTGTTTACAGCTCCAAGTATGGCTTCCAGAGAAT
genomic: TCAGGCGGCCGCGCGACCTCCTCTGCTTGCGTTGCGTGCCTCCCCACGAGgtcgaggtac ... tgttcaacagACACACGGCCTGCACTAGTGTTTACAGCTCCAAGTATGGCTTCCAGAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccttagttgacttctcatactgtatcatcttctggctttatttgttcaacagACACACGGCCTGCACTAGTGTTTACAGCTCCAAGTATGGCTTCCAGAGAATCCTTCATGAGTACCATTTTCTTCTTCTTGCTTCTGTTCTCCCTCGGCTG
       agttgac  putative branch site (score: 4)
                                      ctttattt  putative PPT
                                       tttatttgtt  TA-rich tract