1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgatgttatataatttccggcctaaggggtgtgaatattcccataattgagtctaacaaaatggtttgcgatcactcatgttccgtatcactgcttgcagCCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGCTCACGTACTTGCAGTTTGAGTTAAGAGCAGGCATAAACCAGTATGATGG
species | Oryza sativa |
transcript | LOC_Os11g03590.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCG CCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGCEST: gi|88762465|gb|CI772021.1|CI772021
genomic: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCGgtatatgctt ... ctgcttgcagCCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGC
EST: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCG CCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGCEST: gi|88732542|gb|CI755719.1|CI755719
genomic: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCGgtatatgctt ... ctgcttgcagCCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGC
EST: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCG CCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGCEST: gi|88394896|gb|CI607623.1|CI607623
genomic: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCGgtatatgctt ... ctgcttgcagCCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGC
EST: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCG CCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGCEST: gi|88735968|gb|CI759476.1|CI759476
genomic: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCGgtatatgctt ... ctgcttgcagCCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGC
EST: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCG CCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGC
genomic: GCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCGgtatatgctt ... ctgcttgcagCCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGC
attgagtctaacaaaatggtttgcgatcactcatgttccgtatcactgcttgcagCCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGCTCACGTACTTGCAGTTTGAGTTAAGAGCAGGCATAAACCAGTATGATGG
gtctaac putative branch site (score: 2)
taacaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgttatataatttccggcctaaggggtgtgaatattcccataattgagtctaacaaaatggtttgcgatcactcatgttccgtatcactgcttgcagCCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGCTCACGTACTTGCAGTTTGAGTTAAGAGCAGGCATAAACCAGTATGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
tgatgtt
- - - - - - - - ccggcct
- - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc