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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcagGTAAGGCTTTGTTCGGCGAGAACGAATGGTACTTCTTCAGCCCGAGGGACCGCAAGTACCCCAACGGCGCTCGCCCCAACCGCGCCGCCGGCTCGGGGTA

Basic information

species Oryza sativa
transcript LOC_Os11g03300.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03300.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G127379_T01 (Zea mays), 3'ss of exon 1
------------------------------------------gtaactaactaact--aatcaccatacatatatatactatccatgtatcaattaaactcg-atcaaatt-aatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcagGTAAGGCTTTGTTCGGCGAGAACGAATGGTACTTCTTCAGCCCGAGGGACCGCAAGTACCCCAACGGCGCTCGCCCCAACCGCGCCGCCGGCTCGGGGTA
                                           |    |  | | |  | ||        ||  | |  ||| | |   | |   |||   | | | | || |||  | |   | | |   | | |  |||    || ||  |  |  |  |   |  | |||  ||||| ||||||||||| || || ||||  |||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
gtacgtgattctttatttctttcttccctctcttattcgttcattgtcacttgagttgagtcgttcagactagttgtgttattcctagctaatccaaatctgcacccagttgaatctcatatgatttaattattctttcttcctcctgtggtatcgtgttcg---ttcttcagCCAAGGCATTGTTCGGCGACAAGGAGTGGTTTTTCTTCAGCCCCCGGGACCGCAAGTACCCCAACGGCGCCCGCCCCAACCGCGCCGCCGGGTCCGGGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcagGTAAGGCTTTGTTCGGCGAGAACGAATGGTACTTCTTCAGCCCGAGGGACCGCAAGTACCCCAACGGCGCTCGCCCCAACCGCGCCGCCGGCTCGGGGTA
            aaatttaacttt  TA-rich tract