Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtccagaacctgtacagatactcaagtttttctcacttctaagtatcaagtactaaccttcagtattctgacaatgcagGGTTGTGATGGATCGGTGCTGCTAGATGACACCCCAACCTTCACTGGAGAGAAGACCGCCGCCCCGAACAACAACTCTCTGCGTGGATTCGATGTTATAG

Basic information

species Oryza sativa
transcript LOC_Os11g02100.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88745172|gb|CI768532.1|CI768532
EST:     GGGTGCATCATTGCTCCGCCTCCACTTCCATGACTGCTTTGTCAATG---                         G-TTGTGATGGATCGGTGCTGCTAGATGACACCCCAACCTTCACTGGAGAG
genomic: GGGTGCATCATTGCTCCGCCTCCACTTCCATGACTGCTTTGTCAATGAAAgtgtccagaa ... gacaatgcagGGTTGTGATGGATCGGTGCTGCTAGATGACACCCCAACCTTCACTGGAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttttctcacttctaagtatcaagtactaaccttcagtattctgacaatgcagGGTTGTGATGGATCGGTGCTGCTAGATGACACCCCAACCTTCACTGGAGAGAAGACCGCCGCCCCGAACAACAACTCTCTGCGTGGATTCGATGTTATAG
               taagtat  TA-rich tract