1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgcgtccacatttgctttcttcttcctccattcccattcccccctactctcagatgcgtggataccccttcctctgatctacagGTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTCAGCATTCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCA
species | Oryza sativa |
transcript | LOC_Os11g01740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCTCCAAAGTGCAAGCTTTCTCTTCTTCCTGCGTCTGGATCTCGCTCAG GTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTCEST: gi|29624052|gb|CB629063.1|CB629063
genomic: ATCTCCAAAGTGCAAGCTTTCTCTTCTTCCTGCGTCTGGATCTCGCTCAGgtatgcgtcc ... tgatctacagGTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTC
EST: ATCTCCAAAGTGCAAGCTTTCTCTTCTTCCTGCGTCTGGATCTCGCTCAG GTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTCEST: gi|88315797|gb|CI617270.1|CI617270
genomic: ATCTCCAAAGTGCAAGCTTTCTCTTCTTCCTGCGTCTGGATCTCGCTCAGgtatgcgtcc ... tgatctacagGTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTC
EST: ATCTCCAAAGTGCAAGCTTTCTCTTCTTCCTGCGTCTGGATCTCGCTCAG GTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTC
genomic: ATCTCCAAAGTGCAAGCTTTCTCTTCTTCCTGCGTCTGGATCTCGCTCAGgtatgcgtcc ... tgatctacagGTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTC
attcccattcccccctactctcagatgcgtggataccccttcctctgatctacagGTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTCAGCATTCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCA
ctctgat putative branch site (score: 49)
ccccttcctctgatct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgtccacatttgctttcttcttcctccattcccattcccccctactctcagatgcgtggataccccttcctctgatctacagGTTTCTCCTCTGCCTGCCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTCAGCATTCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG