1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...tattcccatgcttgatagtagattgaatttcatagtgaagcattagtaaaagttgcacaagttttttttaaaggaaaaacaaaatgatatactgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAGGGGTTACCAGCTGCCCCGTGACTCCCGGGGATCACTCGAGGTGTTCAA
species | Oryza sativa |
transcript | LOC_Os11g01140.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88824890|gb|CI775455.1|CI775455
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88387658|gb|CI585361.1|CI585361
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88571917|gb|CI663290.1|CI663290
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88385258|gb|CI630359.1|CI630359
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|29635046|gb|CB640055.1|CB640055
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88733019|gb|CI756196.1|CI756196
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88316759|gb|CI624201.1|CI624201
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88311599|gb|CI574816.1|CI574816
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88397020|gb|CI593232.1|CI593232
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCGATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88327366|gb|CI645149.1|CI645149
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|571767|gb|D41278.1|D41278
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATNCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88305657|gb|CI632024.1|CI632024
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88412022|gb|CI566751.1|CI566751
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88572958|gb|CI664529.1|CI664529
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|3759015|gb|C96714.1|C96714
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88311077|gb|CI657990.1|CI657990
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88337638|gb|CI632140.1|CI632140
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88724881|gb|CI748140.1|CI748140
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88403118|gb|CI570859.1|CI570859
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88363311|gb|CI643169.1|CI643169
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88376993|gb|CI597777.1|CI597777
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAEST: gi|88733869|gb|CI755379.1|CI755379
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
gtaaaagttgcacaagttttttttaaaggaaaaacaaaatgatatactgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAGGGGTTACCAGCTGCCCCGTGACTCCCGGGGATCACTCGAGGTGTTCAA
ttttttttaaaggaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcccatgcttgatagtagattgaatttcatagtgaagcattagtaaaagttgcacaagttttttttaaaggaaaaacaaaatgatatactgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAGGGGTTACCAGCTGCCCCGTGACTCCCGGGGATCACTCGAGGTGTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC