1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aactgcttacaaagcaacctgtgatcaaatgatggttgtgcttgttgataatacaaagcaaaggtactacaataagttgatttgcgtgtgttttgttcagGCAATTCGGTTGATGATGATGCTATTGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGTTCA
species | Oryza sativa |
transcript | LOC_Os10g42970.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tgataatacaaagcaaaggtactacaataagttgatttgcgtgtgttttgttcagGCAATTCGGTTGATGATGATGCTATTGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGTTCA
ttttgttc CT-rich tract
tacaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgcttacaaagcaacctgtgatcaaatgatggttgtgcttgttgataatacaaagcaaaggtactacaataagttgatttgcgtgtgttttgttcagGCAATTCGGTTGATGATGATGCTATTGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- ctgctta
- - - - - aaagcaa
- - - - - - - - -cctgtga
- - - - - - - - - - - - - -aatgatg
- - - - - - - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcgtg