1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagcaatttcttctttaattaactcactctgtgatcgatcagatcacctgcattaattcgttcatctatctatctatctatcacatacgcgtagtaagtaagaagtatgatttgaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGCATATTGGTCGCCGCCGACAAGTTGGTGGAGCAGGCCTTCGCAGCCGCC
species | Oryza sativa |
transcript | LOC_Os10g42780.6 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|88307634|gb|CI644670.1|CI644670
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|88397594|gb|CI684521.1|CI684521
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|88363281|gb|CI643139.1|CI643139
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|88573775|gb|CI665544.1|CI665544
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|33816892|gb|CF334280.1|CF334280
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|88571207|gb|CI662580.1|CI662580
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|88349211|gb|CI678186.1|CI678186
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|88573041|gb|CI664612.1|CI664612
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|88413483|gb|CI581498.1|CI581498
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGTTGGTGGTGTCGCTGGGEST: gi|88574833|gb|CI666602.1|CI666602
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGNTGGGEST: gi|88428582|gb|CI565050.1|CI565050
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|29660093|gb|CB656368.1|CB656368
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGEST: gi|88327467|gb|CI646650.1|CI646650
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
EST: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACC ATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
genomic: CCGTCGGAGTCGGAGAAGAAGCCGCCACCGCCCATTGTGGGCTGCGCACCgtgagcaatt ... gaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGG
tctatctatctatcacatacgcgtagtaagtaagaagtatgatttgaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGCATATTGGTCGCCGCCGACAAGTTGGTGGAGCAGGCCTTCGCAGCCGCC
tatgatttgaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaatttcttctttaattaactcactctgtgatcgatcagatcacctgcattaattcgttcatctatctatctatctatcacatacgcgtagtaagtaagaagtatgatttgaaataatagATGGCGCATGCAGCTTGTGCGGAATATGGCGCAGCTGGTGGTGTCGCTGGGCATATTGGTCGCCGCCGACAAGTTGGTGGAGCAGGCCTTCGCAGCCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG