Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttgtgtgtgtgagagagactgtgttcttctgtaattcgtgtgattttttttctcttacgagtcgactatatttatatgtgcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG

Basic information

species Oryza sativa
transcript LOC_Os10g42420.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42420.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G094390_T01 (Zea mays), 3'ss of exon 1
---------------------------------------ggttgtgtgtgtgagagagactgtgttcttctgtaattcgtgtgattttt----------tttctcttacgagtcgactatatttatatgtgcgtatgc--ctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG
                                       | |||||     | ||  ||  |   | |  | |  |  |||||| |             | | | ||  | ||   | |  |   | | ||     |   | |   |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |  ||||| ||||||||||
gtactgtggattagattggattttatgggtgatcgatttgattgtggagtcgggattgatcgcactttcttttgctctgtgtgagtgccgcctgtgcaatattttttgtgtgtgtgcgaattccgtttctgatggcggtgcaagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCGGCGGCGCACCGCAGCCTCGGCG

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G134045_T02 (Zea mays), 3'ss of exon 1
-------------ggttgtgtgtgtgagagag-actgtgttcttctgtaattcgtgtgattttttttctcttacgagtcgactatatttatatgtgcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG
               |||   | |      |   || |||     ||   | |  |||| |||||||    | || |   |   |  | ||    | | | || |     ||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||
gtactgttgattcaattgatcgcgctttctatcgctctgtgtgagtgccgtccacgtgacttttttttctgtgcgcg--aatcgttctgatggtggtgcacgcgt-----gcagATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACGGTGTCTTCCTCTGCATCGACTGCTCGGCGGTGCACCGCAGCCTCGGCG

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA08G36700.2 (Glycine max), 3'ss of exon 1
------------------------------------------------------------------------------------------------ggttgtgtgtgtgagagagactgtgttct-tctgtaattcgtgtgattttttttct--cttacgagtcgactatatttatatgtgcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG
                                                                                                ||||     | |  ||||    || |    |||| ||| | |||| || |   | |   ||  || | |      ||| | |||     ||  |  ||| |||||||| ||||| ||||| || |||||||| |||||||| |||||||| || ||  |||| ||||||||||| ||||| ||||| ||||| || |||||||
gtttggtttttgtaattttgaatttcgaatttcaatttgagtgcataatcgttggttccgtgatttcgttttatacagtttgaaattttcgtttgtggtttctgatttacgagatctggtttcagatctgcaatacctgtgcttgtgcgtttgatttttgaattggtatggtttttttgt-----tgtttttttttcagATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTTCTCTGCATCGATTGCTCCGCCGTACACCGCAGTCTCGGCG

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA01G12340.2 (Glycine max), 3'ss of exon 1
-----------------------------------------------------------------------------------------ggttgtgtgtgtgagagagactgtgttct-tctgtaattcgtgtgattttttttctcttacgagtcgactatatttatatgtgcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG
                                                                                         ||||     | |  ||||    || |    ||||| || |  ||| |  | | | |  |     | || | | | |   | |   | |   | | || |||||||| ||||| ||||| || |||||||| |||||||| |||||||| || ||  |||||||||||||||| ||||| ||||| ||||| || |||||||
gttttttgtttataattttgaatttcaatttgagtgcataatcgttggttccgtgatttcgtttaatatagtctgaacttttcgtttgtggtttctgatttacgagatctggtttcagatctgtgatacccgtggtagtgtgtttgattt---ttgaatttgtatggcttttttttttttttaatttcagATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCG

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
-------------------------------------------ggttgtgtgtgtgagagagactgtgttcttctgtaattcg--tgtgattttttttc-----tcttacgagtcgactatatttatatgt---gcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG
                                             || ||| | |      |  | || | ||||||  ||    | || ||    |       | |  ||| | ||      || | | |   |  | |   |  |||  ||||||| || || || || || ||||||||||| ||||| |||||||| || ||  |||||||||||||||||||||| ||||| ||  | || || || |
gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattggatctcggttttttattttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EDO98081 (Chlamydomonas reinhardtii), 3'ss of exon 1
---ggttgtgtgtgtgagagagactgtgttcttctgtaattcgt-gtgattttttttctcttacg--agtcgacta-tatttatatgtgcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG
    ||||   |  |  |   || ||    |    ||     |  | ||       |     | |  ||| |   |       | | ||     ||     |||||| |||||||||| |||  |  ||||||||||||||||||||||||  | || || |||||| ||||| |  ||||| | | | |||| ||     | || |
gtaagttgcaggcatacgcaggattggacgccggggtgcccggccgggacggcaggtgggggaaggcagttgcggagcgagcgtgtctgaacgggctgtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTATGGAGTCTTCATCTGCCTGAACTGCGCGGGCATCCATCGGTCTTTGGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88391695|gb|CI600884.1|CI600884
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88443725|gb|CI591950.1|CI591950
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGGGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTC-GTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88337707|gb|CI632209.1|CI632209
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88369628|gb|CI582823.1|CI582823
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|58668257|gb|CK056943.1|CK056943
EST:     CCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|58688164|gb|CK076851.1|CK076851
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88759874|gb|CI769430.1|CI769430
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88353012|gb|CI630190.1|CI630190
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGANCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88424735|gb|CI606534.1|CI606534
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88377396|gb|CI602881.1|CI602881
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCTGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|86829640|gb|CI286805.1|CI286805
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88413308|gb|CI581323.1|CI581323
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88364370|gb|CI612319.1|CI612319
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88390821|gb|CI611047.1|CI611047
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88371076|gb|CI597553.1|CI597553
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88391745|gb|CI603264.1|CI603264
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88345727|gb|CI630995.1|CI630995
EST:     CGATAAGAACACCGTCTTCCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAANGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CGATAAGAACACCGTCTTCC-GCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88358633|gb|CI617931.1|CI617931
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88364650|gb|CI612465.1|CI612465
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88401347|gb|CI585903.1|CI585903
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCT-CGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88694474|gb|CI738512.1|CI738512
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88363963|gb|CI607273.1|CI607273
EST:     CGATAAGAACACCGTCTTCCGCAAGCTCCGCCGCCAAATCAGACAAAAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CGATAAGAACACCGTCTTCCGCAAGCTCCGC-GCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|117230026|gb|CT846403.1|CT846403
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88358855|gb|CI619359.1|CI619359
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88337650|gb|CI632152.1|CI632152
EST:     NCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88305707|gb|CI632074.1|CI632074
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88372429|gb|CI610752.1|CI610752
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|33654041|gb|CF276655.1|CF276655
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88408013|gb|CI589042.1|CI589042
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88727868|gb|CI749380.1|CI749380
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88397242|gb|CI580752.1|CI580752
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAAAGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|84117391|gb|CD151158.1|CD151158
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88346915|gb|CI628585.1|CI628585
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGANTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88348778|gb|CI631472.1|CI631472
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88433892|gb|CI584387.1|CI584387
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGAAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88386866|gb|CI629193.1|CI629193
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88692834|gb|CI736409.1|CI736409
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88421136|gb|CI566977.1|CI566977
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88451464|gb|CI565517.1|CI565517
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|88347066|gb|CI631146.1|CI631146
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
EST: gi|29635809|gb|CB640818.1|CB640818
EST:     CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAG                         ATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC
genomic: CCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 68 (upstream exon), 75 (downstream exon)
Score: 17

ACCCTCTGCTTCGGCTGCCATGGCGACCGACTCCTCCTCCTCCGCTGCCGCCGATAAGAACACCGTCTTCCGCAAGCTCCGCGCCAAATCAGACAACAAGgtgtgttact ... taatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttctcttacgagtcgactatatttatatgtgcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG
                                          gcctaat  putative branch site (score: 17)
                     actatatttatatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttgtgtgtgtgagagagactgtgttcttctgtaattcgtgtgattttttttctcttacgagtcgactatatttatatgtgcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG

- - - - - - - - - - - - - - ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgcc