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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccccaccgccgccattgccgccctcctaaaccctaaccccccatccccacaccaccaccgctcttgcttcctaatctaatctactcctattgcttggttgttgtagAGGCGGCGGCCGCGAATGGCGGCGCTGACTCCGCGGCGGCCGACGGCGGCGGCGACGACAAGGACGCCGCCAAGCGCGCGGTCCCGGTGTTCAGGGAGTT

Basic information

species Oryza sativa
transcript LOC_Os10g42110.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G169080_T01 (Zea mays), 3'ss of exon 1
gtaa--gccccaccgccgccattgccgccctcctaaaccctaaccccccatccccacaccaccaccgctcttgcttcctaatctaatctactcctattgcttggttgttgtagAGGCGGCGGCCGCGAATGGCGGCGCTGACTCCGCGGCGGCCGACGGCGGCGGCGACGACAAGGACGCCGCCAAGCGCGCGGTCCCGGTGTTCAGGGAGTT---------------
||||  | | | || || ||   || |||  | ||||||||||| |||   | ||  | |  || |   |  ||  |    ||   ||| ||  |  ||  ||     |  |  ||| | ||| ||||| |||| ||| |||         |  |  |||| ||||||||||||||| ||||  ||||||||||| |||||||||||||||||               
gtaaccgtcacgccccctcccccgctgccg-cttaaaccctaacgcccggccaccgaatc--catctaaccggca-cgcgctcgcgtctgctt-tgctg--tgtccaatcgaatggcagAGGCGGCGAACGGCGCCGCCGAC---------GGGGGAGGCGACGGCGACGACAAGGAGGCCGTGAAGCGCGCGGTGCCGGTGTTCAGGGAGTTCGCGCTGGCCGAGCT

upper sequence: LOC_Os10g42110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G054634_T02 (Zea mays), 3'ss of exon 1
gtaagccccaccgccgccattgccgccctcctaaaccctaacccc-ccatccccacacca-ccaccgctcttgcttcctaatctaatctactcctattgcttggttgttgtagAGGCGGCGGCCGCGAATGGCGGCGCTGACTCCGCGGCGGCCGACGGCGGCGGCGACGACAAGGACGCCGCCAAGCGCGCGGTCCCGGTGTTCAGGGAGTT---------------
||||||  ||| ||| ||   ||||||  | |||||||||||||| ||    |||    | || | || | ||||| |   |||   || ||        | || ||  | |||||||||      |||||||||||| |||         |  || |||| ||| ||||||||||| || |  ||||||||||| |||||||||||||||||               
gtaagcgtcac-gcccccgccgccgccg-cttaaaccctaaccccgccgaatccatctaatccgcggcgcgtgcttgc--gtctgg-ctgctgtgtccaatcggatg--gcagAGGCGGC------GAATGGCGGCGCCGAC---------GGGGAAGGCGACGGTGACGACAAGGAGGCTGTGAAGCGCGCGGTGCCGGTGTTCAGGGAGTTTGCTCTGGCCGAGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaccaccgctcttgcttcctaatctaatctactcctattgcttggttgttgtagAGGCGGCGGCCGCGAATGGCGGCGCTGACTCCGCGGCGGCCGACGGCGGCGGCGACGACAAGGACGCCGCCAAGCGCGCGGTCCCGGTGTTCAGGGAGTT
                    taatctaat  TA-rich tract