1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtctggactgaacagcttgatctgaactacctgttaccatgatcgttaactaatgggcagaattaaagaataatgctaatgtaattgttggcatgtacagGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGG
species | Oryza sativa |
transcript | LOC_Os10g39760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAG GATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCEST: gi|88826277|gb|CI776842.1|CI776842
genomic: TCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAGgtgcgtgccc ... gcatgtacagGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGC
EST: TCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAG GATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCEST: gi|29656168|gb|CB652443.1|CB652443
genomic: TCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAGgtgcgtgccc ... gcatgtacagGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGC
EST: CACTCCTCGCTCCCCCGCGCGCTTCGCCCGCTCGCGCGGCCGCCTCCGAG GATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCEST: gi|29656938|gb|CB653213.1|CB653213
genomic: C-CTCCTC-CTCCCCCGC-CGCTTCGCCCGC-CGCGCGGCCGCCTCCGAGgtgcgtgccc ... gcatgtacagGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGC
EST: TCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAG GATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCEST: gi|29656169|gb|CB652444.1|CB652444
genomic: TCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAGgtgcgtgccc ... gcatgtacagGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGC
EST: TCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAG GATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGC
genomic: TCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAGgtgcgtgccc ... gcatgtacagGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGC
ttaactaatgggcagaattaaagaataatgctaatgtaattgttggcatgtacagGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGG
tgctaat putative branch site (score: 3)
agaattaaagaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggactgaacagcttgatctgaactacctgttaccatgatcgttaactaatgggcagaattaaagaataatgctaatgtaattgttggcatgtacagGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGG
- - - -ctgaaca
- - - - - - - - -tgatctg
- - - - - - - - - - - - - ctacctg
- - - - - - - - - - - - - - - - - taccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgttg