1 5' 3' | 2 5' 3' | 3 5' 3' |
gttcgcctccgcgcggcctcccagatcccccctagtgaggggcgcatttgcttttgcttcgccttcgccttccttcctcctccagatctcgctgattttggttggttctctctcgcccttttttgttcggatcccggaggtgcgcagGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGCTGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGT
species | Oryza sativa |
transcript | LOC_Os10g38970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG GTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCEST: gi|163920984|gb|EG710397.1|EG710397
genomic: TCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgttcgcctcc ... aggtgcgcagGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGC
EST: GACCGGATCGGCCT---CGGCATCTTCCACAGCGCCGTCCAG GTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCEST: gi|13420451|gb|AU174541.1|AU174541
genomic: GACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgttcgcctcc ... aggtgcgcagGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGC
EST: TCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG GTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCEST: gi|33817055|gb|CF334366.1|CF334366
genomic: TCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgttcgcctcc ... aggtgcgcagGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGC
EST: TCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG GTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCEST: gi|218505580|gb|FG966210.1|FG966210
genomic: TCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgttcgcctcc ... aggtgcgcagGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGC
EST: TC-NCAAGGACCGGATC-GCCTCGGCGGCATCTTCCACAGCGCCGTCCAG GTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCEST: gi|58601212|gb|CK011740.1|CK011740
genomic: TCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgttcgcctcc ... aggtgcgcagGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGC
EST: TCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG GTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGC
genomic: TCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgttcgcctcc ... aggtgcgcagGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGC
tgattttggttggttctctctcgcccttttttgttcggatcccggaggtgcgcagGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGCTGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGT
cgctgat putative branch site (score: 10)
ttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcctccgcgcggcctcccagatcccccctagtgaggggcgcatttgcttttgcttcgccttcgccttccttcctcctccagatctcgctgattttggttggttctctctcgcccttttttgttcggatcccggaggtgcgcagGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGCTGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC