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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtattagttttaatatcaggggctgatatgtaatgtcgcgagaaacaaaaaagttctttgggtttagcgccctcgcgctgatgtcgccggcggcgtgcagGACCACCGCCAGTTCAAGCAGCGGTACTACGAGTTCGCCGACTACCACGCCGGCGGCGGCCCGGTGTTCCTGCGCATCTGCGGCGAGTCCTCCTGCAACG

Basic information

species Oryza sativa
transcript LOC_Os10g36780.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36780.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G082502_T01 (Zea mays), 3'ss of exon 1
--------------------gtattagttttaatatcaggg--gctgatatgtaatgtcgcgagaaacaaaaaagttctttgggtttagcgccctcgcgctgatgtcgccggcggcgtg-cagGACCACCGCCAGTTCAAGCAGCGGTACTACGAGTTCGCCGACTACCAC---GCCGGCGGCGGCCCGGTGTTCCTGCGCATCTGCGGCGAGTCCTCCTGCAACG
                     | |  |  |   | ||  |   ||      | |      |  | |  |   | | |  |||  || || ||| |||| |  | | ||   ||||| |  ||||||||||| || ||||||||||| |||| |||||||  |||||||||    |||  |||||||||||| |||||||||||||||||||||||| |||||    
gtgagtcatcagtcaactccctctccggctccctgtcgcgcacgccacggcgcacccgtactgggaggagggaggattcttgt-ttgagagccgtcgctc--acgccgatcgcggcttttcagGACCACCGGCAATTCAAGCAGCGCTACTTCGAGTTCCTCGACTACCATCGGGCCCCCGGCGGCCCGGTCTTCCTGCGCATCTGCGGCGAGTCCGCCTGCG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaaagttctttgggtttagcgccctcgcgctgatgtcgccggcggcgtgcagGACCACCGCCAGTTCAAGCAGCGGTACTACGAGTTCGCCGACTACCACGCCGGCGGCGGCCCGGTGTTCCTGCGCATCTGCGGCGAGTCCTCCTGCAACG
                              cgctgat  putative branch site (score: 4)