1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtagctcaagttcttcaatttcatgcctttttctgcatccaacaaagcttagatttcagctaaattaagctcctagctgacgagttcttgaaacttgcagCAGCCATGGCTAAAGAGTATCCTGCCTCCCCCAAAGCTCAGCAGCTGCAAGAATCCAAGAAGCAGCGGCTCACCTACATCCTCGTGGTGAGCGCGCTCTG
species | Oryza sativa |
transcript | LOC_Os10g36690.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCAATTGCTGAGGTCACAGGGAGGATCTAGGATCTCTGCATTCTGAAG CAGCCATGGCTAAAGAGTATCCTGCCTCCCCCAAAGCTCAGCAGCTGCAAG
genomic: GCGCAATTGCTGAGGTCACAGGGAGGATCTAGGATCTCTGCATTCTGAAGgtaaattcca ... aaacttgcagCAGCCATGGCTAAAGAGTATCCTGCCTCCCCCAAAGCTCAGCAGCTGCAAG
agcttagatttcagctaaattaagctcctagctgacgagttcttgaaacttgcagCAGCCATGGCTAAAGAGTATCCTGCCTCCCCCAAAGCTCAGCAGCTGCAAGAATCCAAGAAGCAGCGGCTCACCTACATCCTCGTGGTGAGCGCGCTCTG
agctgac putative branch site (score: 3)
taaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctcaagttcttcaatttcatgcctttttctgcatccaacaaagcttagatttcagctaaattaagctcctagctgacgagttcttgaaacttgcagCAGCCATGGCTAAAGAGTATCCTGCCTCCCCCAAAGCTCAGCAGCTGCAAGAATCCAAGAAGCAGCGGCTCACCTACATCCTCGTGGTGAGCGCGCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - -tgcatcc
- - - - - - - - - - - - - - - - - - - - aacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcttg