Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaaagctgctagctacccccaagtcctcccgtcatttttaggatccatcgattataatttgtgggtggttaatttgatttgtgtttcttgcggttcagACAAGAAGGCCTTCCCCGACTTGTCCGTTCTCGGGTGGTACTCCATTGGGACCAATGTGCACGCCACCGACATGGGAATCCACCATGGGGACTACACCGA

Basic information

species Oryza sativa
transcript LOC_Os10g36229.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36229.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G080652_T01 (Zea mays), 3'ss of exon 1
gtaa-ctaaagc----tgctagctacccccaagtc----ctcccgtcatttttaggatcc-----atcgattataatttgtgggtggtt-aatttgatttgtgtttc-ttgcggtt---------cagACAAGAAGGCCTTCCCCGACTTGTCCGTTCTCGGGTGGTACTCCATTGGGACCAATGTGCACGCCACCGACATGGGAATCCACCATGGGGACTACACCGA
|||| ||   ||    || |   |    |   |      ||  |   |    | | ||||     | || |     || | || |||||  ||     | ||| ||  || |||           |||| |||||||  ||||||||||| | ||| ||||| |||||||||| ||| | | ||||||||| ||||||||||  ||||||| |               
gtaagctggggcattttgttttttgtttcacggcttcatctttcacgacgcctggaatcctagggaacgctagggtttcgcggatggtttgatgatgctggtgctttgttacggccgtggatgtgcagATAAGAAGGTGTTCCCCGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAGCGATGTGCACGACACCGACATGCTAATCCACAAATCA-----------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatcgattataatttgtgggtggttaatttgatttgtgtttcttgcggttcagACAAGAAGGCCTTCCCCGACTTGTCCGTTCTCGGGTGGTACTCCATTGGGACCAATGTGCACGCCACCGACATGGGAATCCACCATGGGGACTACACCGA
                                      tgtttctt  CT-rich tract
                         ttaatttgatttgt  TA-rich tract