1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcactcttcttggtgtctgcactccttgatgtgaatgatcagttttttatgctcttcatgatgttaaaatattatatgttactcatgagctgatgtgaattgttctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTGAGCAGCTATTCAAGGAAACAGGCACCTTCAAGAAGAACTTCCCCTCAG
species | Oryza sativa |
transcript | LOC_Os10g35930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88389456|gb|CI600625.1|CI600625
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88301022|gb|CI592202.1|CI592202
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|32948518|gb|BP185090.1|BP185090
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88396312|gb|CI598424.1|CI598424
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88400530|gb|CI593605.1|CI593605
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88377073|gb|CI597857.1|CI597857
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGGAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88371278|gb|CI600126.1|CI600126
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88727289|gb|CI750944.1|CI750944
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88391153|gb|CI595407.1|CI595407
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88300748|gb|CI589740.1|CI589740
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAGGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|88371464|gb|CI602642.1|CI602642
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTEST: gi|4879590|gb|AU063889.1|AU063889
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGGTTCTTTACTGCAAGACCCATTTEST: gi|88314107|gb|CI602439.1|CI602439
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGG-TTCTTTACTGCAAGACCCATTT
EST: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTAEST: gi|88401722|gb|CI591049.1|CI591049
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTA
EST: CCTACCACAAGTTTTGCTTCAGATGCAGCCACTGCAAAGGCAAACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCAATTTTEST: gi|218489691|gb|FG954871.1|FG954871
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
EST: CCTACCACAAGTCTTGCTTCA-ATGCAGCCACTGCAAAGGCACACTTTCG ATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
genomic: CCTACCACAAGTCTTGCTTCAGATGCAGCCACTGCAAAGGCACACTTTCGgtatgcactc ... ctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTT
gatgttaaaatattatatgttactcatgagctgatgtgaattgttctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTGAGCAGCTATTCAAGGAAACAGGCACCTTCAAGAAGAACTTCCCCTCAG
agctgat putative branch site (score: 118)
ttctatttcc putative PPT
taaaatattatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcactcttcttggtgtctgcactccttgatgtgaatgatcagttttttatgctcttcatgatgttaaaatattatatgttactcatgagctgatgtgaattgttctatttccagATGTGCAGCTATTCGTCCATGGATGGGGTTCTTTACTGCAAGACCCATTTTGAGCAGCTATTCAAGGAAACAGGCACCTTCAAGAAGAACTTCCCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC