1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcaagcaaggctctctctatcgcgatctcatcctccgtttgattgattcttgatttgatggttgggggcaatggcaactatggcagGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGC
species | Oryza sativa |
transcript | LOC_Os10g35644.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAG GGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTEST: gi|88341787|gb|CI642931.1|CI642931
genomic: GCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAGgcaagcaagg ... actatggcagGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGT
EST: GCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAG GGCATTGTACCACCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTEST: gi|88720628|gb|CI743927.1|CI743927
genomic: GCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAGgcaagcaagg ... actatggcagGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGT
EST: GCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAG GGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGT
genomic: GCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAGgcaagcaagg ... actatggcagGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGT
cctccgtttgattgattcttgatttgatggttgggggcaatggcaactatggcagGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGC
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcaaggctctctctatcgcgatctcatcctccgtttgattgattcttgatttgatggttgggggcaatggcaactatggcagGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG