1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgtcatgttggcctgaatattttggcattttgtcaggttgggcttcccagatagcttgtctcttgctgcactaagctcttccaatttttaaaaatggcagCTCCCAAGCCCATTGCTCGGCTTATTTCCCATGTCATTCTTGATTTAGATGGTACCCTCTTAAACACAG
species | Oryza sativa |
transcript | LOC_Os10g32730.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGCCGGAGGCAGCTGCAGGGAAGGACGCCGTCGCCGGACACATGCGGG CTCCCAAGCCCATTGCTCGGCTTATTTCCCATGTCATTCTTGATTTAGATGEST: gi|58654300|gb|CK042980.1|CK042980
genomic: GTCGCCGGAGGCAGCTGCAGGGAAGGACGCCGTCGCCGGACACATGCGGGgtaagccgca ... aaaatggcagCTCCCAAGCCCATTGCTCGGCTTATTTCCCATGTCATTCTTGATTTAGATG
EST: GTCGCCGGAGGCAGCTGCAGGGAGGGAGGCCGTCGCCGGACACATGCGGG CTCCCAAGCCCATTGCTCGGCTTATTTCCCATGTCATTCTTGATTTAGATG
genomic: GTCGCCGGAGGCAGCTGCAGGGAAGGACGCCGTCGCCGGACACATGCGGGgtaagccgca ... aaaatggcagCTCCCAAGCCCATTGCTCGGCTTATTTCCCATGTCATTCTTGATTTAGATG
cccagatagcttgtctcttgctgcactaagctcttccaatttttaaaaatggcagCTCCCAAGCCCATTGCTCGGCTTATTTCCCATGTCATTCTTGATTTAGATGGTACCCTCTTAAACACAG
ttccaatttttaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcatgttggcctgaatattttggcattttgtcaggttgggcttcccagatagcttgtctcttgctgcactaagctcttccaatttttaaaaatggcagCTCCCAAGCCCATTGCTCGGCTTATTTCCCATGTCATTCTTGATTTAGATGGTACCCTCTTAAACACAG
- -catgttg
- - - - - gcctgaa
- - - - - - - - - - - tggcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgca