1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacatattggtcttacctttcgtgtgtaagataatatatgatccctttggaaatcttatttccatgcgctcacgctgataattctaccggtattttacagGTTTCGGAGGAGTTACTATGGGAATTATTTGTGCAAGCAGGCCCTGTTG
species | Oryza sativa |
transcript | LOC_Os10g31900.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCTACGTCGGCAACCTCGACCCCCAG GTTTCGGAGGAGTTACTATGGGAATTATTTGTGCAAGCAGGCCCTGTTGEST: gi|218490390|gb|FG958429.1|FG958429
genomic: CACCTACGTCGGCAACCTCGACCCCCAGgttagggttc ... tattttacagGTTTCGGAGGAGTTACTATGGGAATTATTTGTGCAAGCAGGCCCTGTTG
EST: GCCACCACCTACGTCGGCAACCTCGACCCCCAG GTTTCGGAGGAGTTACTATGGGAATTATTTGTGCAAGCAGGCCCTGTTGEST: gi|218497396|gb|FG967338.1|FG967338
genomic: GCCACCACCTACGTCGGCAACCTCGACCCCCAGgttagggttc ... tattttacagGTTTCGGAGGAGTTACTATGGGAATTATTTGTGCAAGCAGGCCCTGTTG
EST: CGGAGCGGAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCCCAG GTTTCGGAGGAGTTACTATGGGAATTATTTGTGCAAGCAGGCCCTGTTG
genomic: CGGAGCGGAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCCCAGgttagggttc ... tattttacagGTTTCGGAGGAGTTACTATGGGAATTATTTGTGCAAGCAGGCCCTGTTG
tttggaaatcttatttccatgcgctcacgctgataattctaccggtattttacagGTTTCGGAGGAGTTACTATGGGAATTATTTGTGCAAGCAGGCCCTGTTG
aaatcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatattggtcttacctttcgtgtgtaagataatatatgatccctttggaaatcttatttccatgcgctcacgctgataattctaccggtattttacagGTTTCGGAGGAGTTACTATGGGAATTATTTGTGCAAGCAGGCCCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - tgatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgctgat