1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatttgaccaatgcagaatttctagttcacttcttctagtgtatggtcatggttgtcgtttcacttgtttcatgatttttgttccacactggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGCTGACAATATGGGATACTG
species | Oryza sativa |
transcript | LOC_Os10g31830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCG GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGCEST: gi|88423584|gb|CI579296.1|CI579296
genomic: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgt ... tggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC
EST: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCG GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAEST: gi|88399284|gb|CI618474.1|CI618474
genomic: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgt ... tggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGA
EST: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCG GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGCEST: gi|88345035|gb|CI625881.1|CI625881
genomic: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgt ... tggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC
EST: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCG GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC
genomic: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgt ... tggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC
ggtcatggttgtcgtttcacttgtttcatgatttttgttccacactggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGCTGACAATATGGGATACTG
atgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatttgaccaatgcagaatttctagttcacttcttctagtgtatggtcatggttgtcgtttcacttgtttcatgatttttgttccacactggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGCTGACAATATGGGATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - -caatgca
- - - - - - - - - - - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - catggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca