1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctctatgttccttcagaactcaaatcagtttggcactttctggggagcaaacacatttatgtatcacatattgatgcatccattgtttttttttctacagCTAATAATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAG
species | Oryza sativa |
transcript | LOC_Os10g30520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
agcaaacacatttatgtatcacatattgatgcatccattgtttttttttctacagCTAATAATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAG
tattgat putative branch site (score: 7)
tccattgttttttttt putative PPT
attgtttttttttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctatgttccttcagaactcaaatcagtttggcactttctggggagcaaacacatttatgtatcacatattgatgcatccattgtttttttttctacagCTAATAATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- ctatgtt
- - - - -ccttcag
- - - - - - - - -actcaaa
- - - - - - - - - - - - - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - - - - gagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatcc