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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaagttgatattattatcttgatatatatgtgctggaaaagacgattggcatctgccttgccccaatatgttctaatcgttatgttggttatgtctcagGAACATTGTTTCGACAGTAAATCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAACCCAAAG

Basic information

species Oryza sativa
transcript LOC_Os10g29660.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g29660.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA16G25450.3 (Glycine max), 3'ss of exon 2
--acaagttgatattattatcttgatatatatgtgctggaaaagacgattggcatctgccttgccccaatatgttctaatcgttatgttggttatgtctc-agGAACATTGTTTCGACAGTAAATCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAACCCAAAG
       |||     || || |   | ||| |    | | | | |  || |   | | ||||      || || | ||||  | | | || || |   || || || ||||| || ||||| ||| ||||||| | |||||| || |||| ||| || || || |||||||||||||||||||| || |||
ctttggattgtgcaaataatttgcttttatttacattagcatacataatag---ttttccttctttttatgtggtttaataatcaagctgtttgtacatccagAAATATTGTGTCCACAGTCAATTTGGACTGTAAGTTGGACCTCAAAACAATTGCACTTCAAGCTCGTAATGCAGAGTACAATCCCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggcatctgccttgccccaatatgttctaatcgttatgttggttatgtctcagGAACATTGTTTCGACAGTAAATCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAACCCAAAG
                          ttctaat  putative branch site (score: 2)
                    aatatgtt  TA-rich tract