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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcttcatctcacgttgaggttaggggattctgggagattaattctcccgcgcaagtgtatcatcctgacatgatttctcaaacttcttattgttgctagATGGAACAAGATACTGGATGAAGTACAAGAACCAGATTGTTTTTGTTCTAGAAGACTCAACTGATCACCTTCAAATGATATAATATACTGATG

Basic information

species Oryza sativa
transcript LOC_Os10g28340.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g28340.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G010871_T04 (Zea mays), 3'ss of exon 1
-------agcttcatctcacgttgaggttaggggattctgggagattaattctcccgcgcaagtgtatcatcctgacatgatttctcaaacttctt-attgttgctagATGGAACAAGATACTGGATGAAGTAC-AAGAACCAGATTGTTTTTGTTCTAGAAGACTCAACTGATCACCTTCAAATGATATAATATACTGATG
       | | ||||||   | |||||  | | ||    |||||||||| ||||||  |||| | ||| ||||||||||| |||||  ||||| || ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| ||| ||||           
tccggtgaacctcatcttcaggtgaggcaaagagag---gggagattaactctccca-gcaaatttataatcctgacatggtttcttgaacttttttattgtagCTAGATGGAACAAGATACTGGATGAAGTACCAAGAATCAGATTGTTTT-GTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA-----------

upper sequence: LOC_Os10g28340.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G010871_T05 (Zea mays), 3'ss of exon 1
---agcttcatctcacgttgaggttaggggattctgggagattaattctcccgcgcaagtgtatcatcctgacatgatttctcaaacttctt-attgttgctagATGGAACAAGATACTGGATGAAGTAC-AAGAACCAGATTGTTTTTGTTCTAGAAGACTCAACTGATCACCTTCAAATGATATAATATACTGATG
   | | ||||||   | |||||  | | ||    |||||||||| ||||||  |||| | ||| ||||||||||| |||||  ||||| || ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| ||| ||||           
gtgaacctcatcttcaggtgaggcaaagagag---gggagattaactctccca-gcaaatttataatcctgacatggtttcttgaacttttttattgtagctagATGGAACAAGATACTGGATGAAGTACCAAGAATCAGATTGTTTT-GTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA-----------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccgcgcaagtgtatcatcctgacatgatttctcaaacttcttattgttgctagATGGAACAAGATACTGGATGAAGTACAAGAACCAGATTGTTTTTGTTCTAGAAGACTCAACTGATCACCTTCAAATGATATAATATACTGATG
                  tcctgac  putative branch site (score: 2)
                                      cttcttatt  putative PPT
                                       ttcttatt  TA-rich tract