1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttcgtttccagatttctgggtttttttttttttggatgcgattcgtgggttttcttgatgctaatgggggcgggctcgatcgatcgatccccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGACGGCGTCGCCGTCGTCAGGCGAGCGTTCGAGG
species | Oryza sativa |
transcript | LOC_Os10g28320.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88570556|gb|CI661929.1|CI661929
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88330876|gb|CI636888.1|CI636888
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88288363|gb|CI661568.1|CI661568
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88740122|gb|CI763630.1|CI763630
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88765993|gb|CI775083.1|CI775083
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88313763|gb|CI597394.1|CI597394
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88314009|gb|CI600011.1|CI600011
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|86885716|gb|CI309843.1|CI309843
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88358029|gb|CI650765.1|CI650765
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88570554|gb|CI661927.1|CI661927
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88570743|gb|CI662116.1|CI662116
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88332260|gb|CI639287.1|CI639287
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|29661845|gb|CB658120.1|CB658120
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|29687719|gb|CB683994.1|CB683994
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGEST: gi|88826098|gb|CI776663.1|CI776663
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
EST: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAG GTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
genomic: TGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGgtaagcaaac ... cccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCG
gtgggttttcttgatgctaatgggggcgggctcgatcgatcgatccccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGACGGCGTCGCCGTCGTCAGGCGAGCGTTCGAGG
tgctaat putative branch site (score: 2)
tcccc putative PPT
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcgtttccagatttctgggtttttttttttttggatgcgattcgtgggttttcttgatgctaatgggggcgggctcgatcgatcgatccccgatgtagGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGACGGCGTCGCCGTCGTCAGGCGAGCGTTCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - -tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg