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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacgaactgtaatattgaaatgactgcgattgaattacctgctgctggtttgtatagaacatcagttttgcctgactgtatatgcttcctgcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCCTCGACGAC

Basic information

species Oryza sativa
transcript LOC_Os10g27174.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g27174.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G030293_T02 (Zea mays), 3'ss of exon 1
cacgaactgtaatat-tgaaatgac--tgcgattgaattacctgctgctggtttgtatagaacatcagttttgcctgactgtatatgcttcctgcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCCTCGACGAC
  | ||  |||  |  | |  ||||  |||  ||||| |      ||| |        | |  ||     |||      | || |||||| |||    ||||||||||| ||||| || || ||||| || ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | || |||
--ccaatagtaccaaatcatgtgacagtgcagttgaaatgaaccatgc-gaacaaagcaaatgattcaccttgataacttataaatgctttctgtcaatgcagCATGGACACCCAAGTGAAGCTTGCTGTTGTGGTAAAGGTGATGGGCAGGACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCTTGGATGAC

upper sequence: LOC_Os10g27174.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv08s0007g07210.t01 (Vitis vinifera), 3'ss of exon 1
----cacgaactgtaata----ttgaaatgactg--cgattgaattacctgctgctggtttgtatagaacatcagttttgcctgactgtatatgcttcctgcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCCTCGACGAC
          || | |||    |||||| ||     | ||| ||| |     || || || ||||     || | || |  |   |  | | |  ||       ||||   |||||| ||  ||| || | ||| || |||||||| || ||||| || || || || |||||||||||||| ||||| |||||||||||  | |     
aatgagtttgcttttatagaacttgaaaggaaaaaccaattaaatgaaa-aatggtgcttagtatt---tatgaattataaccagcaattt-tctttggcagcagTGCGAAATGGATGCCGGGGTGAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGAACTGGATCAAGGGGTCAGGTGACACAGGTGAGAGTGAAGTTTTTGG-----

upper sequence: LOC_Os10g27174.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv08s0007g07210.t01 (Vitis vinifera), 3'ss of exon 4
----cacgaactgtaat--attgaaatgactgcgattgaattacctgctgctggtttgta---tagaacatcagttttgcctgactgtatatgcttcctgcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCCTCGACGAC
    ||    || |||    |  |  | |||   |   || |||   ||  |  ||  |    |    ||||  || |   ||| | | | || || |     |||||  |||||  |   ||| || | ||| || |||||||| || ||||| || || ||||| || ||||||||||||||||| || ||||||||  | |     
tatacatattctttaaatagtctatgtaactagaaagaaaatacaatcttttaattgatgcccttatgcatctattataaatgattttgtttgtttgc----agTGCAAAATGGAATCTGGGGTGAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGAACTGGCTCAAGAGGTCAGGTGACCCAGGTGAGGGTGAAGTTTTTGG-----

upper sequence: LOC_Os10g27174.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S279_27V6.1 (Physcomitrella patens), 3'ss of exon 1
cacgaactgtaatattgaaatgactgc---gattgaat-tacctgctgctggtttgtatagaacatcagttttgcctgactgtatatgcttcctgcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCCTCGACGAC----
   |  || || | ||   ||  ||     ||| | |  |  ||   |  |   | |     |||  ||| |    ||| | ||| ||  |      |||||||    ||| ||   || || |||||  | ||  |||||||||| ||||||||||| ||| | |||||||||||||| ||  | |||||||| || || ||     
---gttctatactgtttctatacctatttggatcgtacatctctttgggagaagtatccccgacaagagtatgtattgaatatatttgtgtaa-atctgtgcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86597404|gb|CI282528.1|CI282528
EST:     TCCGTGCCCTCCTTCTCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|86595603|gb|CI264700.1|CI264700
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|163929264|gb|EG711025.1|EG711025
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|15851525|gb|BI799801.1|BI799801
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|88241277|gb|CI241126.1|CI241126
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|15850971|gb|BI799247.1|BI799247
EST:     TCCGTGCCCTCCTTCGCCGTCC-CCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|33692241|gb|CF320480.1|CF320480
EST:     TCCGTGCCCTCCTTTGCCGTCCGCCGTCGTTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|33804802|gb|CF328278.1|CF328278
EST:     AGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: AGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|87007300|gb|CI278971.1|CI278971
EST:     TCCGTGCCCTCCTTCTCCGTCCACCGTCGTTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|58030374|gb|CX727917.1|CX727917
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|88241268|gb|CI241117.1|CI241117
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|33660971|gb|CF291938.1|CF291938
EST:     AGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: AGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|163929119|gb|EG710976.1|EG710976
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|163917662|gb|EG711244.1|EG711244
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|87032342|gb|CI264123.1|CI264123
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAGG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|55434885|gb|CV730568.1|CV730568
EST:     TAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|55441514|gb|CV734079.1|CV734079
EST:     CGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: CGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|29627673|gb|CB632684.1|CB632684
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|86529866|gb|CI170072.1|CI170072
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|88212090|gb|CI211730.1|CI211730
EST:     CGGAGAAGAGAAG                         CATGTATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: CGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|33670640|gb|CF298879.1|CF298879
EST:     CAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: CAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|163920119|gb|EG709877.1|EG709877
EST:     CCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: CCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|33659528|gb|CF282141.1|CF282141
EST:     GCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: GCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|88244309|gb|CI243431.1|CI243431
EST:     CAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGTTGAAGGTGATGGGCCGCAC
genomic: CAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|55442123|gb|CV734383.1|CV734383
EST:     GGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: GGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|55433001|gb|CV729524.1|CV729524
EST:     CCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: CCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|163919807|gb|EG711677.1|EG711677
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|86422422|gb|CI059995.1|CI059995
EST:     AGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAATCTTGCCGTCGTGGTGAAGGTGATGGGCTGCAC
genomic: AGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|88240358|gb|CI239520.1|CI239520
EST:     TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: TCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|88204343|gb|CI204192.1|CI204192
EST:     CGCCGTCGTTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: CGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|86421880|gb|CI059453.1|CI059453
EST:     GCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: GCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
EST: gi|33685864|gb|CF314103.1|CF314103
EST:     AGCAGCCGGAGAAGAGAAG                         CATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC
genomic: AGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 88

TTTCACCCTCGCCTCCACTCCTTCCTCCTCGCGCCGTCGCCGCCGCCGCATCCGTGCCCTCCTTCGCCGTCCGCCGTCGCTAGCAGCCGGAGAAGAGAAGgtgcgtcgtc ... gcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCCTCGACGAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtttgtatagaacatcagttttgcctgactgtatatgcttcctgcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCCTCGACGAC
                        gcctgac  putative branch site (score: 88)
                                       cttcctgctt  putative PPT
       tatagaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacgaactgtaatattgaaatgactgcgattgaattacctgctgctggtttgtatagaacatcagttttgcctgactgtatatgcttcctgcttgtgcagCATGGATACCCAGGTCAAACTTGCCGTCGTGGTGAAGGTGATGGGCCGCACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCCTCGACGAC

- - - - - - - - - - tgactgc
- - - - - - - - - - - - - - - - - - - -tgctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttcc