1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aataagcacggactgatttgtttacaggatgatagatgatgcgtaattttgatgtagctttctgatttccgctaatctcatgttcctatctgtactgcagTAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAG
species | Oryza sativa |
transcript | LOC_Os10g21890.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGAGCAGGGCGCCGTCGTTCGTCCTGCTGCATCCGCCCGCATCCATCTG TAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTCEST: gi|88372883|gb|CI640334.1|CI640334
genomic: GCGAGCAGGGCGCCGTCGTTCGTCCTGCTGCATCCGCCCGCATCCATCTGgtgagcacat ... tgtactgcagTAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTC
EST: GCGAGCAGGGCGCCGTCGTTCGTCCTGCTGCATCCGCCCGCATCCATCTG TAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTCEST: gi|88347371|gb|CI632656.1|CI632656
genomic: GCGAGCAGGGCGCCGTCGTTCGTCCTGCTGCATCCGCCCGCATCCATCTGgtgagcacat ... tgtactgcagTAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTC
EST: GCGAGCAGGGCGCCGTCGTTCGTCCTGCTGCATCCGCCCGCATCCATCTG TAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTCEST: gi|88391894|gb|CI603413.1|CI603413
genomic: GCGAGCAGGGCGCCGTCGTTCGTCCTGCTGCATCCGCCCGCATCCATCTGgtgagcacat ... tgtactgcagTAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTC
EST: GCGAGCAGGGCGCCGTCGTTCGTCCTGCTGCATCCGCCCGCATCCATCTG TAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTC
genomic: GCGAGCAGGGCGCCGTCGTTCGTCCTGCTGCATCCGCCCGCATCCATCTGgtgagcacat ... tgtactgcagTAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTC
attttgatgtagctttctgatttccgctaatctcatgttcctatctgtactgcagTAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAG
cgctaat putative branch site (score: 5)
ttcctatct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataagcacggactgatttgtttacaggatgatagatgatgcgtaattttgatgtagctttctgatttccgctaatctcatgttcctatctgtactgcagTAGGATCAATGGAGACGAAGTTATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - -gatgata
- - - - - - - - - - - - - - - - - -atgatgc
- - - - - - - - - - - - - - - - - - - - - - - - ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc