1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggacaccatcagagtgttttataatgttatctatgttctagctagctgctcagttagcttggacataaacactaatgttttccccttatatcttttccagATTGCCTATTTGCTAAGAAGGTTTGGAATGCGCAAAATGCTGGTGCCTCAGCGGTCCTTGTGGTTGATGACAAGGATGAGCCACTGATTACTATGGACTT
species | Oryza sativa |
transcript | LOC_Os10g20630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ctgctcagttagcttggacataaacactaatgttttccccttatatcttttccagATTGCCTATTTGCTAAGAAGGTTTGGAATGCGCAAAATGCTGGTGCCTCAGCGGTCCTTGTGGTTGATGACAAGGATGAGCCACTGATTACTATGGACTT
cactaat putative branch site (score: 90)
tgttttccccttatat CT-rich tract
ttatatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacaccatcagagtgttttataatgttatctatgttctagctagctgctcagttagcttggacataaacactaatgttttccccttatatcttttccagATTGCCTATTTGCTAAGAAGGTTTGGAATGCGCAAAATGCTGGTGCCTCAGCGGTCCTTGTGGTTGATGACAAGGATGAGCCACTGATTACTATGGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -caccatc
- - - - - - - - - - - - - - - ctatgtt
- - - - - - - - - - - - - - - - - - - - - - gctgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaca