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...tgggaaataaatgatacaactgccgtgtttgcgtatttgcggttttaatgttctaccatgttgttgcttacatgtatgtatataactattttgaccacagGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAG
species | Oryza sativa |
transcript | LOC_Os09g38790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGTAGCTCCGTCACCAA GGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGEST: gi|29624560|gb|CB629571.1|CB629571
genomic: CGGCATGGCCATCCACGTCCTCCAGGTCCACAAGG-AG-TCCGTCACCAAgtacgtcccc ... ttgaccacagGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGG
EST: TGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAA GGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGEST: gi|29630516|gb|CB635525.1|CB635525
genomic: TGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAAgtacgtcccc ... ttgaccacagGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGG
EST: GGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAA GGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGEST: gi|58664656|gb|CK053342.1|CK053342
genomic: GGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAAgtacgtcccc ... ttgaccacagGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGG
EST: GGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAA GGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGG
genomic: GGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAAgtacgtcccc ... ttgaccacagGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGG
taatgttctaccatgttgttgcttacatgtatgtatataactattttgaccacagGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAG
ctatttt CT-rich tract
atgtatgtatataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggaaataaatgatacaactgccgtgtttgcgtatttgcggttttaatgttctaccatgttgttgcttacatgtatgtatataactattttgaccacagGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA