1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctgattggaaccacccaatatttgcacaaaagataatacacattcagagataacatttttgcagtttatttttccttactgggttgtttctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCACGGGCTGACAGATTTGGGGTAAACAGGATAGATGCAAAGACTACTGAG
species | Oryza sativa |
transcript | LOC_Os09g38580.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGTCCCGACTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88591166|gb|CI708084.1|CI708084
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|13165448|gb|AU174245.1|AU174245
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88458398|gb|CI695789.1|CI695789
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCCGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88371698|gb|CI680801.1|CI680801
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88412630|gb|CI690376.1|CI690376
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88381594|gb|CI682258.1|CI682258
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88579283|gb|CI688264.1|CI688264
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88587681|gb|CI704392.1|CI704392
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88586750|gb|CI704318.1|CI704318
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88315788|gb|CI617261.1|CI617261
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|88402143|gb|CI614986.1|CI614986
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCEST: gi|66917156|gb|CX104004.1|CX104004
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
EST: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAG GATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
genomic: GGGTCCCGAGTCCAGGATGAGGTGGAGATGCAGAGGAGGACTACCAACAGgtgcgtgctg ... ctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGC
cagagataacatttttgcagtttatttttccttactgggttgtttctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCACGGGCTGACAGATTTGGGGTAAACAGGATAGATGCAAAGACTACTGAG
tccttac putative branch site (score: 51)
ttgtttct putative PPT
tttatttttcctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgattggaaccacccaatatttgcacaaaagataatacacattcagagataacatttttgcagtttatttttccttactgggttgtttctatgtgtagGATCTTTCCTGATGAGAGACAGGACCAGTTTAAGCTACCGTTTCAAGCTGCACGGGCTGACAGATTTGGGGTAAACAGGATAGATGCAAAGACTACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG