Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatccatggctggctgcctcgaaatgctgctcgaatctccgcgtgttgggttgtttgtgttggttcgggagtgtgtgttgggttttgggttgttgtgttggttctgatcggttttgttcttactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG

Basic information

species Oryza sativa
transcript LOC_Os09g37910.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37910.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G162284_T02 (Zea mays), 3'ss of exon 1
gtaaatccatggctggctgcctcgaaatgctgctcgaatctccgcgtgttgggttgtttgtgttggttcgggagtgtgtgttgggttttgggttgttg-tgttggttctgatcggttttgttcttactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
                       | | |||   | | |  ||       |    |   ||||    ||||    ||  ||||||  | |||||||||| || ||||| |  | | ||| ||||      |||||| |||||||||||| ||||| |||||||| ||  ||||||||||||
-----------------------gtactgcgatttggaaatct---caatcaaatccctgtg--aattcga---tgc-tgttgg--tgtgggttgttgctgatggttttattggatttggttc------ggtagGTCTCGAGATGAAGTCGAGGGCGAGGTCCGGCGGTGGCGACTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88903838|gb|CI711540.1|CI711540
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|701299|gb|D47590.1|D47590
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|55414429|gb|CV726805.1|CV726805
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCTG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33663560|gb|CF294527.1|CF294527
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|86829841|gb|CI288535.1|CI288535
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|55435413|gb|CV730838.1|CV730838
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGACGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|55439165|gb|CV732884.1|CV732884
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCTT
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|571727|gb|D41238.1|D41238
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|86829652|gb|CI286813.1|CI286813
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88728459|gb|CI751969.1|CI751969
EST:     TTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: TTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33664035|gb|CF295002.1|CF295002
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCANCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|572169|gb|D41680.1|D41680
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88666280|gb|CI716436.1|CI716436
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|701542|gb|D47833.1|D47833
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33691038|gb|CF319277.1|CF319277
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33655319|gb|CF277933.1|CF277933
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|15008575|gb|AU222963.1|AU222963
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33655325|gb|CF277939.1|CF277939
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88336088|gb|CI647282.1|CI647282
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|55438827|gb|CV732712.1|CV732712
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88595104|gb|CI715260.1|CI715260
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88666063|gb|CI716219.1|CI716219
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88720160|gb|CI745250.1|CI745250
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88352919|gb|CI678953.1|CI678953
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88341443|gb|CI635641.1|CI635641
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88409966|gb|CI571223.1|CI571223
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88904434|gb|CI711742.1|CI711742
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|163926292|gb|EG712876.1|EG712876
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33665089|gb|CF296056.1|CF296056
EST:     GCTTGATAAACCAAATTCCCCGCCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGGAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88576662|gb|CI670807.1|CI670807
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33683487|gb|CF311726.1|CF311726
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|24208407|gb|AU225434.1|AU225434
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|4878390|gb|AU062689.1|AU062689
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88571600|gb|CI662973.1|CI662973
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|569750|gb|D40599.1|D40599
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33659238|gb|CF281851.1|CF281851
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|11863289|gb|AU065278.2|AU065278
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGNCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33665399|gb|CF296366.1|CF296366
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33823174|gb|CF337387.1|CF337387
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|55437048|gb|CV731721.1|CV731721
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|88955287|gb|CI721859.1|CI721859
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
EST: gi|33662889|gb|CF293856.1|CF293856
EST:     GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAG                         GGCTCGAGATGAATGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
genomic: GCTTGATAAACCAAATTCCCCACCGCCGCTTCGTTCTCGCCGATCCGGAGgtaaatccat ... tactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgggttttgggttgttgtgttggttctgatcggttttgttcttactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG
                                         ttcttac  putative branch site (score: 2)
                                    ttttgttcttactc  CT-rich tract
                                    ttttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatccatggctggctgcctcgaaatgctgctcgaatctccgcgtgttgggttgtttgtgttggttcgggagtgtgtgttgggttttgggttgttgtgttggttctgatcggttttgttcttactcggtagGGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG