1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgctccttgcccaagttcttgtcatcatttccaagagcaaaaccatcttgttggctttaatactgatgcagtaactatggtgtcaaattctgtgaccagATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCATCTCCTTGGCACGCACTCCGTCGGAAGGCGCGGCGGCGGCAGTCGACTT
species | Oryza sativa |
transcript | LOC_Os09g37710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGAAAGGAGACTTTTTCATGAGGAGAAGGGAGGCATACGATTACCA ATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCAEST: gi|117235943|gb|CT849037.1|CT849037
genomic: AAGAAGAAAGGAGACTTTTTCATGAGGAGAAGGGAGGCATACGATTACCAgtgagctact ... ctgtgaccagATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCA
EST: AAGAAGAAAGGAGACTTTTTCATGAGGAGAAGGGAGGCATACGATTACCA ATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCA
genomic: AAGAAGAAAGGAGACTTTTTCATGAGGAGAAGGGAGGCATACGATTACCAgtgagctact ... ctgtgaccagATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCA
atcttgttggctttaatactgatgcagtaactatggtgtcaaattctgtgaccagATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCATCTCCTTGGCACGCACTCCGTCGGAAGGCGCGGCGGCGGCAGTCGACTT
cagtaac putative branch site (score: 3)
tttaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctccttgcccaagttcttgtcatcatttccaagagcaaaaccatcttgttggctttaatactgatgcagtaactatggtgtcaaattctgtgaccagATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCATCTCCTTGGCACGCACTCCGTCGGAAGGCGCGGCGGCGGCAGTCGACTT
- - - cttgccc
- - - - - - - -gttcttg
- - - - - - - - - - - - - - - - - -gagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca