1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcttttcttcttcttttagtacttttttcttcttcttttagtgtggtggtgaggtgattgtgggttggtttggatgtgggcagCAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCGGCGGGAGGCGCAGGTGCACCAGATGCGGCGCGACATCGCCGCGCTCCTC
species | Oryza sativa |
transcript | LOC_Os09g37510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATG CAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCGEST: gi|88330945|gb|CI638353.1|CI638353
genomic: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATGgttcttttct ... atgtgggcagCAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCG
EST: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATG CAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCGEST: gi|88742871|gb|CI766379.1|CI766379
genomic: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATGgttcttttct ... atgtgggcagCAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCG
EST: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATG CAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCGEST: gi|88305120|gb|CI652057.1|CI652057
genomic: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATGgttcttttct ... atgtgggcagCAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCG
EST: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATG CAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCGEST: gi|86903390|gb|CI310550.1|CI310550
genomic: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATGgttcttttct ... atgtgggcagCAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCG
EST: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATG CAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCG
genomic: GCGGCCGTCGCCGCCGTGCTGCTCCGCGGCTCGTTCAGCGCATCCAAATGgttcttttct ... atgtgggcagCAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCG
cttcttcttttagtgtggtggtgaggtgattgtgggttggtttggatgtgggcagCAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCGGCGGGAGGCGCAGGTGCACCAGATGCGGCGCGACATCGCCGCGCTCCTC
tctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttttcttcttcttttagtacttttttcttcttcttttagtgtggtggtgaggtgattgtgggttggtttggatgtgggcagCAAGACGGAGGCGAGGATGGCAGCGGCGAGGATGAAGCTGCTGCGGAACCGGCGGGAGGCGCAGGTGCACCAGATGCGGCGCGACATCGCCGCGCTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC