1 5' 3' | 2 5' 3' | 3 5' 3' |
...attaagattgaggagtttgaccacatctgaacattattagcacatggtattatcacttactagtatgtgtaatatttaactttgaggtttcttggtgcagAAAATTCATCAAAAATAATCCATGCCATTACATGGCACCGATCCCCATCATCGGTGTCCTCATCCTACAGGAGTGAGCTGGGAGCCAGCTCGAACAGTTT
species | Oryza sativa |
transcript | LOC_Os09g37040.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ggtattatcacttactagtatgtgtaatatttaactttgaggtttcttggtgcagAAAATTCATCAAAAATAATCCATGCCATTACATGGCACCGATCCCCATCATCGGTGTCCTCATCCTACAGGAGTGAGCTGGGAGCCAGCTCGAACAGTTT
tttctt CT-rich tract
tatgtgtaatatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaagattgaggagtttgaccacatctgaacattattagcacatggtattatcacttactagtatgtgtaatatttaactttgaggtttcttggtgcagAAAATTCATCAAAAATAATCCATGCCATTACATGGCACCGATCCCCATCATCGGTGTCCTCATCCTACAGGAGTGAGCTGGGAGCCAGCTCGAACAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - ctgaaca
- - - - - - - - - - - - - - - - - - - - cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgtg