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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattctcacgagcttttccacttcttttgtttgtgattctttgccgtgcttagatattgatttacttttttaaaattttaatcttgtgttggtttagCAAACTATGGACGGTAGCCAGCTCGGCGACGTGAACCGGTCGCTTGCCATGATGGGCAACGGCGGGAGCGGCAGCGGCGGCGACGGCGACTCGCTGGGAC

Basic information

species Oryza sativa
transcript LOC_Os09g35760.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g35760.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G116658_T01 (Zea mays), 3'ss of exon 1
gtagattctcacgagcttttccacttcttttgtttg--tgattctttgccgtgcttagatattgatttacttttttaaaattttaatcttgtgttggtttagCAAACTATGGACGGTAGCCAGCTCGGCGACGTGAACCGGTCGCTTGCCATGATGGGCAACGGCGGGAGCGGCAGCGGCGGCGACGGCGACTCGCTGGGAC
|||    ||| | |   |     |  |    || ||  ||||| |     ||||| | || |    | |||        |||||    ||||||||    |    |  ||||| ||    ||||| |||||| ||   ||   |   | | |||| |||  |||||||||||| ||||| |||||||| ||||||||||| |
gtacgcactcgctatactccatgcgccggcagtgtggctgattttcctgtgtgctcatatgtc---tgact-------gattttg---ttgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATG---GGCCTGATTGGCGGCGGCGGGAGCGGGAGCGGAGGCGACGGGGACTCGCTGGGCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccgtgcttagatattgatttacttttttaaaattttaatcttgtgttggtttagCAAACTATGGACGGTAGCCAGCTCGGCGACGTGAACCGGTCGCTTGCCATGATGGGCAACGGCGGGAGCGGCAGCGGCGGCGACGGCGACTCGCTGGGAC
                                 ttttaat  putative branch site (score: 3)
       ttagatattgatttac  TA-rich tract