1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaatgaaaatcccagactctgcatcatatgatgcacccagctttcttggatgaacaacatgattggtgatcctattaacatctctctttttgattggcagTTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCAAGGATGGCGTCTCATTAGCTGTATCTGGCTCCATGCTGGCCTAATCCAT
species | Oryza sativa |
transcript | LOC_Os09g35730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCAC TTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGGGGGTTCATCAGCACCEST: gi|58660756|gb|CK049436.1|CK049436
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCACgtacgttctg ... tgattggcagTTTGCAGAAAATGGGAGCTCTTGACTGGAACAAA-GTTGTTCATCAGCACC
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCAC TTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCAEST: gi|58598617|gb|CK009145.1|CK009145
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCACgtacgttctg ... tgattggcagTTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCA
EST: GCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCAC TTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCAEST: gi|218485738|gb|FG958746.1|FG958746
genomic: GCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCACgtacgttctg ... tgattggcagTTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCA
EST: CTTCCAGCCGCTCCGCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCAC TTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCAEST: gi|163928838|gb|EG711925.1|EG711925
genomic: CTTCCAGCCGCTCCGCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCACgtacgttctg ... tgattggcagTTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCAC TTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCA
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCACgtacgttctg ... tgattggcagTTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCA
ttggatgaacaacatgattggtgatcctattaacatctctctttttgattggcagTTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCAAGGATGGCGTCTCATTAGCTGTATCTGGCTCCATGCTGGCCTAATCCAT
tctctctttttgatt CT-rich tract
tattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgaaaatcccagactctgcatcatatgatgcacccagctttcttggatgaacaacatgattggtgatcctattaacatctctctttttgattggcagTTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATCAGCACCAAGGATGGCGTCTCATTAGCTGTATCTGGCTCCATGCTGGCCTAATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-aatgaaaa
- - - - - - - - ctctgca
- - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - -ttggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgat