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...tgttcctgagtaatggcaatgaggaatgatattgcataattttgtcttgtttctctgaattgtttgtagcctacttatagataatgttaatttgttatagGGAAAAACATTGGCTTTTGTTCTACCGATACTTGAGTCATTAGTTAATGGGACACACAAGGCATCCAGAAGGACTGATTATGGCAGGCCTCCAACTGTTT
species | Oryza sativa |
transcript | LOC_Os09g34910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCTCGTCCTCGACGGCCACGACCTGGTCGGCCGCGCGCGCACTGGACAG GGAAAAACATTGGCTTTTGTTCTACCGATACTTGAGTCATTAGTTAATGGGEST: gi|29632934|gb|CB637943.1|CB637943
genomic: ATCTCGTCCTCGACGGCCACGACCTGGTCGGCCGCGCGCGCACTGGACAGgtgagtgttc ... tttgttatagGGAAAAACATTGGCTTTTGTTCTACCGATACTTGAGTCATTAGTTAATGGG
EST: ATCTCGTCCTCGACGGCCACGACCTGGTCGGCCGCGCGCGCACTGGACAG GGAAAAACATCGGCTTTTGTTCTACCGATACTTGAGTCATTAGTTAATGGGEST: gi|29628388|gb|CB633399.1|CB633399
genomic: ATCTCGTCCTCGACGGCCACGACCTGGTCGGCCGCGCGCGCACTGGACAGgtgagtgttc ... tttgttatagGGAAAAACATTGGCTTTTGTTCTACCGATACTTGAGTCATTAGTTAATGGG
EST: ATCTCGTCCTCGACGGCCACGACCTGGTCGGCCGCGCGCGCACTGGACAG GGAAAAACATTGGCTTTTGTTCTACCGATACTTGAGTCATTAGTTAATGGG
genomic: ATCTCGTCCTCGACGGCCACGACCTGGTCGGCCGCGCGCGCACTGGACAGgtgagtgttc ... tttgttatagGGAAAAACATTGGCTTTTGTTCTACCGATACTTGAGTCATTAGTTAATGGG
cttgtttctctgaattgtttgtagcctacttatagataatgttaatttgttatagGGAAAAACATTGGCTTTTGTTCTACCGATACTTGAGTCATTAGTTAATGGGACACACAAGGCATCCAGAAGGACTGATTATGGCAGGCCTCCAACTGTTT
tgttaat putative branch site (score: 19)
tacttatagataatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcctgagtaatggcaatgaggaatgatattgcataattttgtcttgtttctctgaattgtttgtagcctacttatagataatgttaatttgttatagGGAAAAACATTGGCTTTTGTTCTACCGATACTTGAGTCATTAGTTAATGGGACACACAAGGCATCCAGAAGGACTGATTATGGCAGGCCTCCAACTGTTT
-gttcctg
- - - - - - - - - - - - - - - -ttgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcctact