1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agaattgggtatttgattgctgaattagttgtgtgatgatagagttctatgaattcagagttgggatggctgacgattgtttgttgtgttgggtttgcagATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGCAAGCCGCTGCTGTACGGAATCGGCACGCTGCTCGTCATGCCTCTGAGGA
species | Oryza sativa |
transcript | LOC_Os09g34100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCGTGGCCTCCTCCCTCCCGCGGTGCTCATCCTCCGCTGCCCCCACG ATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGCEST: gi|88405517|gb|CI588723.1|CI588723
genomic: CGCTCGTGGCCTCCTCCCTCCCGCGGTGCTCATCCTCCGCTGCCCCCACGgtcgggctcc ... gggtttgcagATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGC
EST: CGCTCGTGGCCTCCTCCCTCCCGCGGTGCTCATCCTCCGCTGACCCCACG ATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGCEST: gi|29645568|gb|CB650575.1|CB650575
genomic: CGCTCGTGGCCTCCTCCCTCCCGCGGTGCTCATCCTCCGCTGCCCCCACGgtcgggctcc ... gggtttgcagATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGC
EST: CGCTCGTGGCCTCCTCCCTCCCGCGGTGCTCATCCTCCGCTGCCCCCACG ATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGCEST: gi|88377451|gb|CI602936.1|CI602936
genomic: CGCTCGTGGCCTCCTCCCTCCCGCGGTGCTCATCCTCCGCTGCCCCCACGgtcgggctcc ... gggtttgcagATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGC
EST: CGCTCGTGGCCTCCTCCCTCCCG-GGTGCTCATCCTCCGCTGCCCCCACG ATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGC
genomic: CGCTCGTGGCCTCCTCCCTCCCGCGGTGCTCATCCTCCGCTGCCCCCACGgtcgggctcc ... gggtttgcagATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGC
tctatgaattcagagttgggatggctgacgattgtttgttgtgttgggtttgcagATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGCAAGCCGCTGCTGTACGGAATCGGCACGCTGCTCGTCATGCCTCTGAGGA
ggctgac putative branch site (score: 42)
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaattgggtatttgattgctgaattagttgtgtgatgatagagttctatgaattcagagttgggatggctgacgattgtttgttgtgttgggtttgcagATCAGAGGGCAGCCGTCGTTGCTGCCAAGCGTGCGCAAGGAATGGCTTGGCAAGCCGCTGCTGTACGGAATCGGCACGCTGCTCGTCATGCCTCTGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt