1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tgcctttctgtttctctattcttaattcttgtatacttggtgtcagaactaactcaaaatctcaaatgggcctcttctgtgttcattttcttatgaacagAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCG
species | Oryza sativa |
transcript | LOC_Os09g33876.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGCGACGAGGGCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAG AGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATCEST: gi|88309869|gb|CI657003.1|CI657003
genomic: GGAGCGACGAGGGCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAGgtgctgtctg ... ttatgaacagAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATG
EST: GGAGCGACGAGGGCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGACCAG AGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATC
genomic: GGAGCGACGAGGGCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAGgtgctgtctg ... ttatgaacagAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATG
gaactaactcaaaatctcaaatgggcctcttctgtgttcattttcttatgaacagAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCG
aactaac putative branch site (score: 3)
cctcttctgtgttcat putative PPT
attttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctttctgtttctctattcttaattcttgtatacttggtgtcagaactaactcaaaatctcaaatgggcctcttctgtgttcattttcttatgaacagAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCG
tgccttt
- - - - tgtttct
- - - - - - - - - - - - attcttg
- - - - - - - - - - - - - - - - - -cttggtg
- - - - - - - - - - - - - - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ctcaaaa