1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgactactttcctatttttcaggtttgacatgaaagcgtttgcgtgtttcattgcttccttttgtgtaatgtaatcattgttaatatttgactctgcagGTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG
species | Oryza sativa |
transcript | LOC_Os09g33790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAACACCGTCCCCTC TTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGEST: gi|87018651|gb|CI254359.1|CI254359
genomic: CAACACCGTCCCCTGgtcagtgctg ... gactctgcagGTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG
EST: CCCGACAAGATCATCGACCCCGACACCAACACCGTCCGCTG GTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGEST: gi|112785501|gb|EE590824.1|EE590824
genomic: CCCGACAAGATCATCGACCCCGACACCAACACCGTCCCCTGgtcagtgctg ... gactctgcagGTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG
EST: AAGCGCGTCCCCGACAAGATCATCGACCCCGACACCAACACCGTCCCCTG GTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG
genomic: AAGCGCGTCCCCGACAAGATCATCGACCCCGACACCAACACCGTCCCCTGgtcagtgctg ... gactctgcagGTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG
tgtttcattgcttccttttgtgtaatgtaatcattgttaatatttgactctgcagGTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG
taatgtaatcattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgactactttcctatttttcaggtttgacatgaaagcgtttgcgtgtttcattgcttccttttgtgtaatgtaatcattgttaatatttgactctgcagGTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - tgacatg
- - - - - - - - - - - - - - - - - - - - ttgcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaatg