1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatatatttcaatagagaatcacatatttatatcctttctaattaaaacaccttgccatttaattcttccataacaactttgtgacctcatacttcttagAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACA
species | Oryza sativa |
transcript | LOC_Os09g29470.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCC AAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCEST: gi|29632057|gb|CB637066.1|CB637066
genomic: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCgtaagaagct ... tacttcttagAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTC
EST: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCC AAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCEST: gi|29632177|gb|CB637186.1|CB637186
genomic: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCgtaagaagct ... tacttcttagAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTC
EST: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCGTACCCC AAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTC
genomic: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCgtaagaagct ... tacttcttagAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTC
aaacaccttgccatttaattcttccataacaactttgtgacctcatacttcttagAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACA
ccataac putative branch site (score: 3)
tacttctt putative PPT
atttaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatatttcaatagagaatcacatatttatatcctttctaattaaaacaccttgccatttaattcttccataacaactttgtgacctcatacttcttagAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA