1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgatgctgtcatttgatttgtttagtggttgagtagtcgtattttactggattccttgacttgcgttgatcgatcattgataactgtgctctgttgatagCTATTTGATGGGCACAACGGATCTGGAGCGGCCATGTACGCGAAGAAGAATCTGTTGAACAATCTTCTACGTGCCATTCCTTCAGGTTTGAGCAGGGATG
species | Oryza sativa |
transcript | LOC_Os09g28560.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
actggattccttgacttgcgttgatcgatcattgataactgtgctctgttgatagCTATTTGATGGGCACAACGGATCTGGAGCGGCCATGTACGCGAAGAAGAATCTGTTGAACAATCTTCTACGTGCCATTCCTTCAGGTTTGAGCAGGGATG
tgataac putative branch site (score: 4)
ctctgtt putative PPT
attgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgatgctgtcatttgatttgtttagtggttgagtagtcgtattttactggattccttgacttgcgttgatcgatcattgataactgtgctctgttgatagCTATTTGATGGGCACAACGGATCTGGAGCGGCCATGTACGCGAAGAAGAATCTGTTGAACAATCTTCTACGTGCCATTCCTTCAGGTTTGAGCAGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- -tgctgtc
- - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - tttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgct