1 5' 3' | 2 5' 3' | 3 5' 3' |
...agctgttggctagtttgttcatccctgttatggattttgtttaaaagcagataatttcatcaaatttcctgtcttgctaacaatttccttattggaaaagGCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAG
species | Oryza sativa |
transcript | LOC_Os09g28310.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATGATCAAGAACAGGGAGTCCGCGGCGAGATCCCGCGCGCGCAAGCAG GCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAACEST: gi|40490325|gb|BX899870.1|BX899870
genomic: GGATGATCAAGAACAGGGAGTCCGCGGCGAGATCCCGCGCGCGCAAGCAGgtcttaaact ... attggaaaagGCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAAC
EST: GGATGATCAAGAACAGGGAGTCCGCGGCGAGTTCCCGCGCGCGCAAGCAG GCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAACEST: gi|29661120|gb|CB657395.1|CB657395
genomic: GGATGATCAAGAACAGGGAGTCCGCGGCGAGATCCCGCGCGCGCAAGCAGgtcttaaact ... attggaaaagGCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAAC
EST: GGATGATCAAGAACAGGGAGTCCGCGGCGAGATCCCGCGCGCGCAAGCAG GCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAACEST: gi|86484495|gb|CI127128.1|CI127128
genomic: GGATGATCAAGAACAGGGAGTCCGCGGCGAGATCCCGCGCGCGCAAGCAGgtcttaaact ... attggaaaagGCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAAC
EST: GGCGAGATCCCGCGCGCGCAAGCAG GCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAACEST: gi|33799976|gb|CF325856.1|CF325856
genomic: GGCGAGATCCCGCGCGCGCAAGCAGgtcttaaact ... attggaaaagGCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAAC
EST: TGATGATCAAGAACAGGGAGTCCGCGGCGAGATCCCGCGCGCGCAAGCAG GCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAACEST: gi|86496364|gb|CI138997.1|CI138997
genomic: GGATGATCAAGAACAGGGAGTCCGCGGCGAGATCCCGCGCGCGCAAGCAGgtcttaaact ... attggaaaagGCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAAC
EST: GGATGATCAAGAACAGGGAGTCCGCGGCGAGATCCCGCGCGCGCAAGCAG GCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAAC
genomic: GGATGATCAAGAACAGGGAGTCCGCGGCGAGATCCCGCGCGCGCAAGCAGgtcttaaact ... attggaaaagGCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAAC
agcagataatttcatcaaatttcctgtcttgctaacaatttccttattggaaaagGCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAG
tgctaac putative branch site (score: 8)
tttccttatt putative PPT
ataatttcatcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgttggctagtttgttcatccctgttatggattttgtttaaaagcagataatttcatcaaatttcctgtcttgctaacaatttccttattggaaaagGCTTACACATTGGAATTGGAAGCTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
-gctgttg
- - - - - - - - -ttcatcc
- - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - aaaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaaa