1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttattgttactaaaattaagtgggagcacttgttttattttcgcctcgtctgttctgtgaacttatccttaaaccttctgatgggaatcacccttgcagGTTACATCCCCTTTTGGAGACATTGTACATCATAAACAAAAGGTTTCCACAGGCCAGTTTTCATTCACAACTGCAGAAGCAGGAAACTACTTGGCTTGCT
species | Oryza sativa |
transcript | LOC_Os09g27980.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ctcgtctgttctgtgaacttatccttaaaccttctgatgggaatcacccttgcagGTTACATCCCCTTTTGGAGACATTGTACATCATAAACAAAAGGTTTCCACAGGCCAGTTTTCATTCACAACTGCAGAAGCAGGAAACTACTTGGCTTGCT
ttctgat putative branch site (score: 3)
tcaccctt putative PPT
aacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttattgttactaaaattaagtgggagcacttgttttattttcgcctcgtctgttctgtgaacttatccttaaaccttctgatgggaatcacccttgcagGTTACATCCCCTTTTGGAGACATTGTACATCATAAACAAAAGGTTTCCACAGGCCAGTTTTCATTCACAACTGCAGAAGCAGGAAACTACTTGGCTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -tgttact
- - - - - - - - - - - - - gcacttg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctg